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src="pubs/Macintosh%20HD:Users:robb:Documents:workfiles:Web%20page:robb:brumfield:pubs:../homepics/birdheader.jpg"></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Publications. Most of these are downloadable as <span class=SpellE>pdf</span> files. For articles not available for download, please contact me.</span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span class=GramE><span style='font-size:12.0pt; font-family:Arial'>Claramunt</span></span></span><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>, S., E. P. <span class=SpellE>Derryberry</span>, R. T. Brumfield, and J. V. Remsen, Jr.</span></span><span style='font-size: 12.0pt;font-family:Arial'> <span class=GramE>In press.</span> Ecological opportunity and diversification in a continental radiation of birds: Climbing adaptations and <span class=SpellE>cladogenesis</span> in the <span class=SpellE>Furnariidae</span>. American Naturalist.</span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Derryberry</span></span><span style='font-size:12.0pt;font-family:Arial'>, E. P., N. <span class=SpellE>Seddon</span>, S. <span class=SpellE>Claramunt</span>, J. A. Tobias, A. Baker, A. <span class=SpellE>Aleixo</span>, and R. T. Brumfield. <span class=GramE>In press.</span> 'Magic traits' in <span class=SpellE>suboscine</span> birds: correlated evolution of beak morphology and song in the <span class=SpellE>Neotropical</span> <span class=SpellE>woodcreeper</span> radiation. Evolution.</span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>McCormack, J. E., B. C. Faircloth, N. G. Crawford, P. A. <span class=SpellE>Gowaty</span>, R. T. Brumfield, and T. C. Glenn. <span class=GramE>In press.</span> <span class=SpellE>Ultraconserved</span> elements are novel <span class=SpellE>phylogenomic</span> markers that resolve placental mammal phylogeny when combined with species tree analysis. Genome Research.</span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Faircloth, B. C., J. E. McCormack, N. G. Crawford, M. G. Harvey, R. T. Brumfield, and T. C. Glenn. <span class=GramE>In press.</span> <span class=SpellE>Ultraconserved</span> elements anchor thousands of genetic markers spanning multiple evolutionary timescales. Systematic Biology.</span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>McCormack, J. E., S. M. <span class=SpellE>Hird</span>, A. J. <span class=SpellE>Zellmer</span>, B. C. <span class=SpellE>Carstens</span>, and R. T. Brumfield. 2012. Applications of next-generation sequencing to <span class=SpellE>phylogeography</span> and <span class=SpellE>phylogenetics</span>. Molecular <span class=SpellE>Phylogenetics</span> and Evolution.</span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Bravo, G. A., R. T. <span class=SpellE>Chesser</span>, and R. T. Brumfield. 2012. <span class=SpellE><em><span style='font-family:Arial'>Isleria</span></em></span>, a new genus of <span class=SpellE>antwren</span> (Aves: Passeriformes: <span class=SpellE>Thamnophilidae</span>). <span class=SpellE>Zootaxa</span>. <a href="Isleria2012.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Naka, L. N., C. L. <span class=SpellE>Bechtoldt</span>, L. M. P. <span class=SpellE>Henriques</span>, and R. T. Brumfield. <span class=GramE>In press.</span> <span class=GramE>The role of physical barriers in the location of avian suture zones in the Guiana Shield, northern Amazonia.</span> American Naturalist.</span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>McCormack, J. E., J. M. <span class=SpellE>Maley</span>, S. M. <span class=SpellE>Hird</span>, E. P. <span class=SpellE>Derryberry</span>, G. R. Graves, and R. T. Brumfield. 2012. Next-generation sequencing reveals <span class=SpellE>phylogeographic</span> structure and a species tree for recent bird divergences. Molecular <span class=SpellE>Phylogenetics</span> and Evolution 62:397-406. <a href="Bird454.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span class=GramE><span style='font-size:12.0pt; font-family:Arial'>Claramunt</span></span></span><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>, S., E. P. <span class=SpellE>Derryberry</span>, J. V. Remsen, Jr., and R. T. Brumfield.</span></span><span style='font-size: 12.0pt;font-family:Arial'> 2011. High dispersal ability inhibits speciation in a continental radiation of passerine birds. Proc. Roy. Soc. London B. <a href="ProcRSocB2011Claramunt.pdf"><span class=SpellE>pdf</span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Cheviron</span></span><span style='font-size:12.0pt;font-family:Arial'>, Z. A., and R. T. Brumfield. 2011. Genomic insights into <span class=SpellE>adapation</span> to high-altitude environments. <span class=GramE>Journal of Heredity.</span> <a href="Cheviron&amp;Brumfield_Herd11.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span class=GramE><span style='font-size:12.0pt; font-family:Arial'>Hird</span></span></span><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>, S. M., R. T. Brumfield, and B. C. <span class=SpellE>Carstens</span>.</span></span><span style='font-size:12.0pt; font-family:Arial'> 2011. <span class=SpellE>PRGmatic</span>: an efficient pipeline for collating genome-enriched second generation sequencing data using a 'provisional-reference genome.' Molecular Ecology Resources 11:743-748. <a href="PRGmatic2011.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Cheviron</span></span><span style='font-size:12.0pt;font-family:Arial'>, Z. A., M. D. Carling, and R. T. Brumfield. 2011. Effects of postmortem interval and preservation method on RNA isolated from field-preserved avian tissues. <span class=GramE>Condor 113:483-489.</span> <a href="RNApreservation.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Derryberry</span></span><span style='font-size:12.0pt;font-family:Arial'>, E. P., S. <span class=SpellE>Claramunt</span>, G. <span class=SpellE>Derryberry</span>, R. T. <span class=SpellE>Chesser</span>, J. <span class=SpellE>Cracraft</span>, A. <span class=SpellE>Aleixo</span>, J. Pérez-<span class=SpellE>Emán</span>, J. V. Remsen, Jr., and R. T. Brumfield. 2011. Lineage diversification and morphological evolution in a large-scale continental radiation: the <span class=SpellE>Neotropical</span> ovenbirds and <span class=SpellE>woodcreepers</span> (Aves: <span class=SpellE>Furnariidae</span>). <span class=GramE>Evolution 65:2973-2986.</span> <a href="furnphylogeny2011.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T. 2010.</span></span><span style='font-size:12.0pt;font-family:Arial'> <span class=GramE>Speciation genetics of biological invasions with hybridization.</span> Molecular Ecology 19:5079-5083. <a href="kaki2010.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Tobias, J. A., J. <span class=SpellE>Aben</span>, E. P. <span class=SpellE>Derryberry</span>, R. T. Brumfield, W. <span class=SpellE>Halfwerk</span>, H. <span class=SpellE>Slabbekoorn</span>, and N. <span class=SpellE>Seddon</span>. 2010. Song divergence by sensory drive in Amazonian birds. <span class=GramE>Evolution 64:2820-2839.</span> <a href="Tobias2010.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Gómez, J. P., G. A. Bravo, R. T. Brumfield, J. G. <span class=SpellE>Tello</span>, and C. D. <span class=SpellE>Cadena</span>. 2010. A phylogenetic approach to disentangling the role of competition and habitat filtering in community assembly of <span class=SpellE>Neotropical</span> forest birds. Journal of Animal Ecology 79:1181-1192. <a href="Gomez2010.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R.T. and M.D. Carling. 2010. The influence of hybrid zones on species tree inference in <span class=SpellE>manakins</span>. Pp. 115-128 in Estimating species trees: Practical and theoretical aspects (L.L. Knowles and L.S. <span class=SpellE>Kubatko</span>, eds.) <span class=GramE>Wiley-Blackwell, Hoboken, NJ.</span></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Pérez-<span class=SpellE>Emán</span>, J. L., L. L. Hernandez, and R. T. Brumfield.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2010. Phylogenetic relationships of the White-throated <span class=SpellE>Barbtail</span>, <span class=SpellE><em><span style='font-family:Arial'>Premnoplex</span></em></span><em><span style='font-family:Arial'> <span class=SpellE>tatei</span> </span></em>(<span class=SpellE>Furnariidae</span>): taxonomic and <span class=SpellE>biogeographical</span> implications. <span class=GramE>Condor 112:561-570.</span> <a href="Ptatei2010.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Carling, M. D., I. J. <span class=SpellE>Lovette</span>, and R. T. Brumfield.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2010. Historical divergence and gene flow: coalescent analyses of mitochondrial, autosomal and sex-linked loci in <span class=SpellE><em><span style='font-family:Arial'>Passerina</span></em></span><em><span style='font-family:Arial'> </span></em>buntings. <span class=GramE>Evolution 64:1762-1772.</span> <a href="CarlingEVOL2010.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span class=GramE><span style='font-size:12.0pt; font-family:Arial'>Claramunt</span></span></span><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>, S., E. P. <span class=SpellE>Derryberry</span>, R. T. <span class=SpellE>Chesser</span>, A. <span class=SpellE>Aleixo</span>, and R. T. Brumfield.</span></span><span style='font-size:12.0pt;font-family: Arial'> 2010. <span class=SpellE>Polyphyly</span> of <span class=SpellE><em><span style='font-family:Arial'>Campylorhamphus</span></em></span> with the description of a new genus for <em><span style='font-family:Arial'>C. <span class=SpellE>pucherani</span></span></em>. <span class=GramE>Auk 127:430-439.</span> <a href="Drymotoxeres2010.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Derryberry</span></span><span style='font-size:12.0pt;font-family:Arial'>, E., S. <span class=SpellE>Claramunt</span>, K. E. <span class=SpellE>O Quin</span>, A. <span class=SpellE>Aleixo</span>, R. T. <span class=SpellE>Chesser</span>, J. V. Remsen, Jr., and R. T. Brumfield. 2010. <span class=SpellE><em><span style='font-family:Arial'>Pseudasthenes</span></em></span>, a new genus of ovenbird (Aves: Passeriformes: <span class=SpellE>Furnariidae</span>). <span class=SpellE>Zootaxa</span> 2416:61-68. <a href="pseudasthenes.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Derryberry</span></span><span style='font-size:12.0pt;font-family:Arial'>, E., S. <span class=SpellE>Claramunt</span>, R. T. <span class=SpellE>Chesser</span>, A. <span class=SpellE>Aleixo</span>, J. <span class=SpellE>Cracraft</span>, R. G. Moyle, and R. T. Brumfield. 2010. <span class=SpellE><em><span style='font-family:Arial'>Certhiasomus</span></em></span>, a new genus of <span class=SpellE>woodcreeper</span> (Aves: Passeriformes: <span class=SpellE>Dendrocolaptidae</span>). <span class=SpellE>Zootaxa</span> 2416:44-50. <a href="certhiasomus.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Mackay, A. J., W. L. Kramer, J. K. <span class=SpellE>Meece</span>, R. T. Brumfield, and L. D. Foil. 2010. Host feeding patterns of <span class=SpellE><em><span style='font-family: Arial'>Culex</span></em></span><em><span style='font-family:Arial'> </span></em>mosquitos (<span class=SpellE>Diptera</span>: <span class=SpellE>Culicidae</span>) in East Baton Rouge Parish. Journal of Medical Entomology 47:238-248. <a href="MacKay2010ME09168.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Yuri, T., R. W. Jernigan, R. T. Brumfield, N. K. <span class=SpellE>Bhagabati</span>, and M. J. Braun.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2009. The effect of marker choice on estimated levels of introgression across an avian (<span class=SpellE>Pipridae</span>: <span class=SpellE><em><span style='font-family:Arial'>Manacus</span></em></span>) hybrid zone. Molecular Ecology 18:4888-4903. <a href="Yuri2009.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> <a href="Yuri2009SI.zip">supplemental info</a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span class=GramE><span style='font-size:12.0pt; font-family:Arial'>Chesser</span></span></span><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>, R. T., S. <span class=SpellE>Claramunt</span>, E. <span class=SpellE>Derryberry</span>, and R. T. Brumfield.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2009. <span class=SpellE><em><span style='font-family:Arial'>Geocerthia</span></em></span>, a new genus of terrestrial ovenbird (Aves: Passeriformes: <span class=SpellE>Furnariidae</span>). <span class=SpellE>Zootaxa</span> 2213:64-68. <a href="geocerthia2009.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Burney, C. W., and R. T. Brumfield. 2009. Ecology predicts levels of genetic differentiation in <span class=SpellE>Neotropical</span> birds. American Naturalist 174:358-368. <a href="Burney2009.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> supplementary files: <a href="BurneyAppendix.pdf"><span class=SpellE>pdf</span></a> excel <a href="BurneyTableA1.xls">A1</a> <a href="BurneyTableA2.xls">A2</a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Moyle, R. G., R. T. <span class=SpellE>Chesser</span>, R. T. Brumfield, J. G. <span class=SpellE>Tello</span>, D. J. <span class=SpellE>Marchese</span>, and J. <span class=SpellE>Cracraft</span>. 2009. Phylogeny and phylogenetic classification of the <span class=SpellE>antbirds</span>, ovenbirds, <span class=SpellE>woodcreepers</span>, and allies (Aves: Passeriformes: <span class=SpellE>Infraorder</span> <span class=SpellE>Furnariides</span>). <span class=GramE>Cladistics 25:1-20.</span> <a href="MoyleCladistics09.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Cheviron</span></span><span style='font-size:12.0pt;font-family:Arial'>, Z. A., and R. T. Brumfield. 2009. Migration-selection balance and local adaptation of mitochondrial haplotypes in <span class=SpellE>Rufous</span>-collared Sparrows (<span class=SpellE><em><span style='font-family:Arial'>Zonotrichia</span></em></span><em><span style='font-family:Arial'> <span class=SpellE>capensis</span></span></em>) along an <span class=SpellE>elevational</span> gradient. <span class=GramE>Evolution 63:1593-1605.</span> <a href="ChevironEVOL2009.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Carling, M. D., and R. T. Brumfield.</span></span><span style='font-size:12.0pt; font-family:Arial'> 2009. Speciation in <span class=SpellE><em><span style='font-family:Arial'>Passerina</span></em></span> buntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation. Molecular Ecology 18:834-847. <a href="CarlingBrumfieldMolEcol2009.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Lance, S. L., C. Hagen, T. C. Glenn, R. T. Brumfield, K. Faust <span class=SpellE>Stryjewski</span>, and G. R. Graves.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2009. Fifteen polymorphic microsatellite loci from Jamaican <span class=SpellE>streamertail</span> hummingbirds (<span class=SpellE><em><span style='font-family:Arial'>Trochilus</span></em></span>). Conservation Genetics 10:1195-1198. <a href="Lanceetal2009.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Cheviron</span></span><span style='font-size:12.0pt;font-family:Arial'>, Z. A., A. Whitehead, and R. T. Brumfield. 2008. <span class=SpellE>Transcriptomic</span> variation and plasticity in <span class=SpellE>Rufous</span>-collared Sparrows (<span class=SpellE><em><span style='font-family:Arial'>Zonotrichia</span></em></span><em><span style='font-family:Arial'> <span class=SpellE>capensis</span></span></em>) along an altitudinal gradient. Molecular Ecology 17:4556-4569. <a href="Cheviron_etal_MEC08.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Carling, M. D., and R. T. Brumfield.</span></span><span style='font-size:12.0pt; font-family:Arial'> 2008. Haldane's Rule in an avian system: using cline theory and divergence population genetics to test for differential introgression of mitochondrial, autosomal, and sex-linked loci across the <span class=SpellE><em><span style='font-family:Arial'>Passerina</span></em></span> bunting hybrid zone. <span class=GramE>Evolution 62:2600-2615.</span> <a href="Carling_Evolution2008.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., L. Liu, D. E. <span class=SpellE>Lum</span>, and S. V. Edwards.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2008. Comparison of species tree methods for reconstructing the phylogeny of bearded <span class=SpellE>manakins</span> (Aves: <span class=SpellE>Pipridae</span>: <span class=SpellE><em><span style='font-family:Arial'>Manacus</span></em></span>) from <span class=SpellE>multilocus</span> sequence data. Systematic Biology 57:719-731. <a href="Manacus_SystBiol2008.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> <a href="onlinesupSYSTBIOLManacus08.pdf">online supplementary material</a> <a href="concat2.pdf">nexus file</a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Liu, L., D. K. Pearl, R. T. Brumfield, and S. V. Edwards. 2008. Estimating species trees using <span class=GramE>multiple-allele</span> DNA sequence data. <span class=GramE>Evolution 62:2080-2091.</span> <a href="Liu_Evolution2008.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Bates, J. M., C. D. <span class=SpellE>Cadena</span>, J. G. <span class=SpellE>Tello</span>, and R. T. Brumfield. 2008. Diversification in the <span class=SpellE>Neotropics</span>: Phylogenetic patterns and historical processes. <span class=SpellE>Ornitologia</span> <span class=SpellE>Neotropical</span> 19:427-432. <a href="batesetal2008.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Carling, M. D., and R. T. Brumfield.</span></span><span style='font-size:12.0pt; font-family:Arial'> 2008. Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in <span class=SpellE>Passerina</span> buntings. <span class=GramE>Genetics 178:363-377.</span> <a href="carlingbrum08.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Peterson, A. T., R. T. Brumfield, R. G. Moyle, A. S. <span class=SpellE>Nyári</span>, J. V. Remsen Jr., and M. B. Robbins. 2007. The need for proper vouchering in phylogenetic studies of birds. Molecular <span class=SpellE>Phylogenetics</span> and Evolution 45:1042-1044.</span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., and O. <span class=SpellE>Maillard</span> Z. 2007. <span class=GramE>Birds of the central Río <span class=SpellE>Paracti</span> valley, a humid <span class=SpellE>montane</span> forest in <span class=SpellE>departamento</span> Cochabamba, Bolivia.</span> <span class=SpellE>Ornitologia</span> <span class=SpellE>Neotropical</span> 18:321-337. <a href="sanonofre.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., J. G. <span class=SpellE>Tello</span>, Z. A. <span class=SpellE>Cheviron</span>, M. D. Carling, N. Crochet, and K. V. Rosenberg. 2007. Phylogenetic conservatism and antiquity of a tropical specialization: army-ant-following in the typical <span class=SpellE>antbirds</span> (<span class=SpellE>Thamnophilidae</span>). Molecular <span class=SpellE>Phylogenetics</span> and Evolution 45:1-13. <a href="thamno2007.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span class=GramE><span style='font-size:12.0pt; font-family:Arial'>Chesser</span></span></span><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>, R. T., and R. T. Brumfield.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2007. <span class=SpellE><em><span style='font-family:Arial'>Tarphonomus</span></em></span>, a new genus of ovenbird (Aves: Passeriformes: <span class=SpellE>Furnariidae</span>) from South America. Proceedings of the Biological Society of Washington 120:337-339. <a href="Chesser&amp;Brumfield.2007.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span class=GramE><span style='font-size:12.0pt; font-family:Arial'>Chesser</span></span></span><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>, R. T., F. K. Barker, and R. T. Brumfield.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2007. Four-fold <span class=SpellE>polyphyly</span> of the genus formerly known as <span class=SpellE><em><span style='font-family:Arial'>Upucerthia</span></em></span>, with notes on the systematics and evolution of the avian subfamily <span class=SpellE>Furnariinae</span>. Molecular <span class=SpellE>Phylogenetics</span> and Evolution 44:1320-1332. <a href="upucerthia2007.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., and S. V. Edwards. 2007. Evolution into and out of the Andes: a Bayesian analysis of historical diversification in <span class=SpellE><em><span style='font-family: Arial'>Thamnophilus</span></em></span><em><span style='font-family:Arial'> </span></em><span class=SpellE>antshrikes</span>. <span class=GramE>Evolution 61:346-367.</span> Contact me for <span class=SpellE>pdf</span> or if you subscribe to Evolution you can download it here: <a href="http://www.blackwell-synergy.com/doi/full/10.1111/j.1558-5646.2007.00039.x">Evolution website</a> <a href="brumedwards.nex">Nexus data file</a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Carling, M. D., and R. T. Brumfield.</span></span><span style='font-size:12.0pt; font-family:Arial'> 2007. Gene sampling strategies for multi-locus population estimates of genetic diversity (theta). <span class=SpellE><span class=GramE>PLoS</span></span><span class=GramE> ONE 2:e160.</span> <a href="carlingbrum07-1.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Isler</span></span><span style='font-size:12.0pt;font-family:Arial'>, M. I., D. R. <span class=SpellE>Lacerda</span>, P. R. <span class=SpellE>Isler</span>, S. J. Hackett, K. V. Rosenberg, and R. T. Brumfield. 2006. <span class=SpellE><em><span style='font-family:Arial'>Epinecrophylla</span></em></span>, a new genus of <span class=SpellE>antwrens</span> (Aves: Passeriformes: <span class=SpellE>Thamnophilidae</span>). Proceedings of the Biological Society of Washington 119:522-527. <a href="isleretal2006.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Cheviron</span></span><span style='font-size:12.0pt;font-family:Arial'>, Z. A., S. H. Hackett, and R. T. Brumfield. 2006. Sequence variation in the coding region of the melanocortin-1 receptor gene (MC1R) is not associated with plumage variation in the Blue-crowned <span class=SpellE>Manakin</span> (<span class=SpellE><em><span style='font-family:Arial'>Lepdiothrix</span></em></span><em><span style='font-family:Arial'> <span class=SpellE>coronata</span></span></em>). Proceedings of the Royal Society of London Series B 273:1613-1618. <a href="cheviron2006.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Berg, K. S., R. T. Brumfield, and V. A. <span class=SpellE>Apanius</span>. 2006. Phylogenetic and ecological determinants of the <span class=SpellE>Neotropical</span> dawn chorus. Proceedings of the Royal Society of London Series B 273:999-1005. <a href=":brumfield:pubs:brum06-1.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Edwards, S. V., S. Birks, R. T. Brumfield, and R. <span class=SpellE>Hanner</span>.</span></span><span style='font-size:12.0pt;font-family:Arial'> 2005. The future of avian genetic resources collections: archives of evolutionary and environmental history. <span class=GramE>Auk 122:979-984.</span> <a href=":brumfield:pubs:brum05-4.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T. 2005.</span></span><span style='font-size:12.0pt;font-family:Arial'> <span class=GramE>Mitochondrial variation in Bolivian populations of the Variable <span class=SpellE>Antshrike</span> (<span class=SpellE><em><span style='font-family: Arial'>Thamnophilus</span></em></span><em><span style='font-family:Arial'> <span class=SpellE>caerulescens</span></span></em>).</span> <span class=GramE>Auk 122:414-432.</span> <a href="brum05-1.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span class=GramE><span style='font-size:12.0pt; font-family:Arial'>Isler</span></span></span><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>, M. L., P. R. <span class=SpellE>Isler</span>, and R. T. Brumfield.</span></span><span style='font-size:12.0pt;font-family: Arial'> 2005. <span class=SpellE>Clinal</span> variation in vocalizations of an <span class=SpellE>antbird</span> (<span class=SpellE>Thamnophilidae</span>) and implications for defining species limits. <span class=GramE>Auk 122:433-444.</span> <a href="brum05-2.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T. 2005.</span></span><span style='font-size:12.0pt;font-family:Arial'> Review: The speciation and biogeography of birds. <span class=GramE>Condor 107:477-478.</span> <a href="brum05-3.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Sheldon, F. H., J. V. Remsen, and R. T. Brumfield. 2005. Letter concerning Academy of Natural Science Job Cuts. <a href="academyletter.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Whitney, B. M., D. C. Oren, and R. T. Brumfield. 2004. A new species of <span class=SpellE><em><span style='font-family:Arial'>Thamnophilus</span></em></span><em><span style='font-family:Arial'> </span></em><span class=SpellE>antshrike</span> (Aves: <span class=SpellE>Thamnophilidae</span>) from the Serra do Divisor, Acre, Brazil. <span class=GramE>Auk 121:1031-1039.</span> <a href="brum04-3.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., O. <span class=SpellE>Maillard</span> Z., R. C. <span class=SpellE>Faucett</span>, G. Sánchez, V. G. <span class=SpellE>Rohwer</span>, J. C. <span class=SpellE>Catari</span>, C. G. Schmitt, D. C. Schmitt, R. <span class=SpellE>Strem</span>, and A. M. <span class=SpellE>Mamani</span>. 2004. Birds of the Laguna <span class=SpellE>Kaucaya</span> area, a semi-humid valley in the Andean foothills of <span class=SpellE>departamento</span> Santa Cruz, Bolivia. <span class=SpellE>Ornitologia</span> <span class=SpellE>Neotropical</span> 15:381-398. <a href="brum04-2.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Witt, C. C., and R. T. Brumfield. 2004. Comment on &quot;Are rates of speciation and molecular evolution correlated?&quot; Science 303:173b. <a href="wittbrum04.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., P. <span class=SpellE>Beerli</span>, D. A. Nickerson, and S. V. Edwards. 2003. The utility of single nucleotide polymorphisms in inferences of population history. Trends in Ecology and Evolution 18:249-256. <a href="snp.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=SpellE><span style='font-size:12.0pt;font-family:Arial'>Weicker</span></span><span style='font-size:12.0pt;font-family:Arial'>, J., R. T. Brumfield, and K. Winker. 2001. Estimating the unbiased estimator theta for population genetic survey data. <span class=GramE>Evolution 55:2601-2605.</span> <a href="brum01-3.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., R. W. Jernigan, D. B. McDonald, and M. J. Braun. 2001. Evolutionary implications of divergent clines in an avian (<span class=SpellE><i>Manacus</i></span>; Aves) hybrid zone. <span class=GramE>Evolution 55:2070-2087.</span> <a href="brum01-2.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>McDonald, D. B., M. J. Braun, R. T. Brumfield, and R. P. Clay. 2001. Sexual selection on plumage and behavior in an avian hybrid zone: experimental tests of male-male interactions. <span class=GramE>Evolution 55:1443-1451.</span> <a href="brum01-1.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., and M. J. Braun. 2001. Phylogenetic relationships in bearded <span class=SpellE>manakins</span> (<span class=SpellE>Pipridae</span>; <span class=SpellE><i>Manacus</i></span>) indicate that male plumage color is a misleading taxonomic marker. <span class=GramE>Condor 103:248-258.</span> <a href="brum01-4.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T. 2000.</span></span><span style='font-size:12.0pt;font-family:Arial'> Book review: Molecular evolution: a phylogenetic approach. American Zoologist 40:707. <a href="brum00-1.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Remsen, J. V., Jr., and R. T. Brumfield. 1998. Two new subspecies of <span class=SpellE><i>Cinnycerthia</i></span><i> <span class=SpellE>fulva</span></i> (Aves: <span class=SpellE>Troglodytidae</span>) from the southern Andes. Proceedings of the Biological Society of Washington 111:1008-1015. <a href="remsen1998.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span class=GramE><span style='font-size:12.0pt;font-family:Arial'>Braun, M. J., and R. T. Brumfield.</span></span><span style='font-size:12.0pt;font-family: Arial'> 1998. Enigmatic phylogeny of <span class=SpellE>skuas</span>: An alternative hypothesis. Proceedings of the Royal Society of London B 265:995-999. <a href="brum98-1.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a> </span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., D. L. <span class=SpellE>Swofford</span>, and M. J. Braun. 1997. Evolutionary relationships among the <span class=SpellE>potoos</span> (<span class=SpellE>Nyctibiidae</span>) based on <span class=SpellE>isozymes</span>. Ornithological Monographs 48:129-145. <a href="brumfieldetal1997.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., and A. P. <span class=SpellE>Capparella</span>. 1996. Historical diversification of birds in northwestern South America: A molecular perspective on the role of <span class=SpellE>vicariant</span> events. <span class=GramE>Evolution 50:1607-1624.</span> <a href="brum96.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., and A. P. <span class=SpellE>Capparella</span>. 1996. Genetic differentiation and taxonomy in the <i>Troglodytes <span class=SpellE>aedon</span></i> (House Wren) species group. Condor 98:547-556. <a href="wrencondor96.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p><span style='font-size:12.0pt;font-family:Arial'>Brumfield, R. T., and J. V. Remsen, Jr. 1996. Geographic variation and species limits in <span class=SpellE><i>Cinnycerthia</i></span> wrens of the Andes. Wilson Bulletin 108:205-227. <a href="96wilson.pdf"><span class=SpellE><span class=GramE>pdf</span></span></a></span><span style='font-size:12.0pt'><o:p></o:p></span></p> <p align=center style='text-align:center'><span style='font-size:12.0pt; font-family:Arial'>Last Updated 15 February 2012</span><span style='font-size: 12.0pt'><o:p></o:p></span></p> <p align=center style='text-align:center'><span style='font-size:12.0pt; font-family:Arial'><img border=0 width=583 height=56 id="_x0000_i1026" src="pubs/Macintosh%20HD:Users:robb:Documents:workfiles:Web%20page:robb:brumfield:pubs:../homepics/birdfooter.jpg"></span><span style='font-size:12.0pt'><o:p></o:p></span></p> </div> </body> </html>